Sebastian Lobentanzer's repositories
integrative-transcriptomics
Integrative transcriptomics reveals sexually dimorphic control of the cholinergic/neurokine interface in schizophrenia and bipolar disorder
ask-my-pdf
Question answering system for PDF files
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
beaker
WSGI middleware for sessions and caching
decoupler-py
Python package to infer biological activities from omics data using a collection of methods.
igvf-catalog
Catalog API for the IGVF project
biochatter
Backend library for conversational AI in biomedicine
obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
pymilvus
Python SDK for Milvus.
pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
reproduciblity
Base Version of the Seminar "Reproducibility in Biomedical Science"
scanpy
Single-cell analysis in Python. Scales to >1M cells.
slobentanzer.github.io
personal github.io repository