skembel / picante

R tools for integrating phylogenies and ecology

skembel/picante Issues

phyEstimateDisc vs phyEstimate: xtfrm.data.frame(x) : cannot xtfrm data frames
Updated 3 months ago7
initial values for "corSymm" must be between -1 and 1
Updated 6 months ago2
Error in dimnames(x) <- dnx : 'dimnames' applied to non-array
Updated 8 months ago5
Error in randomizeMatrix
Closed 8 months ago2
Hello, I believe I have a serious issue.
Closed 9 months ago1
node.age error in ses.pd function
Updated 10 months ago1
match.phylo.data fails when given a data.frame with a single column
Closed a year ago1
How to calculate beta NRI and NTI in picante
Updated 2 years ago
PD rooted/unrooted NULL error
Closed 2 years ago3
rarefaction and PD?
Closed 3 years ago2
trialswap and independentswap algorithms don't preserve sample species richness
Closed 3 years ago5
Difference between richness and sample.pool null.model in ses.mpd/ses.pd/ses.mntd ?
Closed 3 years ago2
Phylogeny input file
Closed 3 years ago1
randomizeMatrix with null.model = "independentswap" fails on small communities
Closed 3 years ago2
Can monophyletic taxa in the tree be used as groups for differential testing?
Closed 4 years ago1
bug in `pblmpredict` when argument `predict.originals` is TRUE
Closed 4 years ago3
Can AITCHISON distance be used in MNTD and MPD calculations?
Closed 4 years ago1
Feature request: biplot for Inter-Community Mean Pairwise Distance for traits data
Closed 4 years ago1
Faulty assumption in node.age picks wrong root
Closed 4 years ago1
Bug in ses.pd function
Closed 5 years ago3
Long lines are cut off in vignette PDF
Closed 5 years ago2
abundance weighted PD
Updated 5 years ago2
Update MPD calculation to offer option to include/exclude intra-species distances
Updated 5 years ago
abundance weighted MPD error
Closed 5 years ago2
pd cannot use ultrametric tree(?)
Closed 5 years ago1
Strange PD results
Closed 6 years ago1
Kcalc and phylosignal fail if the supplied data are not a vector
Updated 8 years ago
matrix2sample fails if rownames missing
Closed 9 years ago2