Sina Majidian's repositories
10xpipline
A pipline for haplotyping of 10x genomics
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
CreateFragmentMatrix
Convert input bam and vcf files to a fragment matrix
graph-genomics-review
Precision pangenomics (review article on graph genomics)
GRFP
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
HapCUT2
software tools for haplotype assembly from sequence data
LRSIM
10x Genomics Reads Simulator
phaseme_test
phaseme_test
ProbHap
Probabilistic single-individual haplotyping
Rcourse
An introduction to R programming
sdhapc
Improvement in SDhap code