Sina Majidian's repositories
fastoma_tree
FastOMA is a fast pipeline for species tree inference using placement in Hierarchical Orthologous Groups (HOGs).
extract_poly
Fragment matrix file: A format for extracting haplotype information from BAM and VCF file for polyploids (under test)
algorithms_and_data_structures
180+ Algorithm & Data Structure Problems using C++
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
Conifer
Conifer: Clonal Tree Inference for Tumor Heterogeneity with Single-Cell and Bulk Sequencing Data
coursera_cpp
Source Code and Starter Code for Accelerated Computer Science Fundamentals Specialization on Coursera
exonCNV
Infer exon level CNV from visium spatial data
FastOMA-academy
https://oma-stage.vital-it.ch/oma/academy/module/fastOMA_2023
first-steps-with-python-training
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
gendiscalpy
Python bindings to GenDisCal and addition of phylogenetic tree function
omamo
OMAMO: orthology-based model organism selection
read2tree-
a tool for inferring species tree from sequencing reads
seq_learn_tutorial
:symbols: Code for the Sequence Learning Tutorial at BC2 2021 :nut_and_bolt:
sinamajidian.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
SURVIVOR
Toolset for SV simulation, comparison and filtering
swat23-data-in-use
Tutorial for our submission to SWAT4HCLS "data-in-use"
UNIL_MLS_Master_FS_HOG_WGD_Detection
Python code for quantitative and comparative analysis of hierarchical orthologous groups to place whole genome duplication events on a phylogenetic tree of a given set of organisms.