simexin's repositories
1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
clinvar
Parsing ClinVar data
cnvkit
Copy number variant detection from targeted DNA sequencing
cnvkit-examples
Example datasets for CNVkit (http://github.com/etal/cnvkit)
Connor
Deduplication based on custom inline DNA barcodes.
coursera-archive
Coursera Archive
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
icr142-validation
Preparation scripts and bcbio integration for the ICR142 NGS validation series
IMPACT-SV
Detection of Structural Variants Using Delly and Annotation using dRanger
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nextflow
A DSL for data-driven computational pipelines
Numpy-Tutorial-SciPyConf-2016
SciPy 2016 NumPy tutorial
proxifier-profiles
My Proxifier profiles
SeQC
SQL databases from BAM/SAM files with a focus on QC.
setup-simple-pptp-vpn
Setup Simple PPTP VPN Server for Ubuntu and Debian
speedseq
A flexible framework for rapid genome analysis and interpretation
tabtk
Toolkit for processing TAB-delimited format
user-training
HMS Research Computing User Training
uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
wdl
Workflow Description Language - Specification and Implementations
youtube-dl
Small command-line program to download videos from YouTube.com and other video sites