sigven

act

Run your GitHub Actions locally 🚀

hugo-blox-builder

🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！

broom

Convert statistical analysis objects from R into tidy format

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

formattable

Formattable Data Structures

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

hugo-blog-awesome

Fast, minimal blog with dark mode support.

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

decoupleR

R package to infer biological activities from omics data using a collection of methods.

singleCellTK

Interactively analyze single cell genomic data

datavisguide

Introductory guide to the art and science of data visualisation. Insights, advice, and examples (with code) to make data outputs more readable, accessible, and impactful.

quarto_titlepages

A Quarto extension for making title and cover pages for PDF output.

PrettyPDF

Quarto extension to generate a PDF with (pretty) LaTeX styling.

nextNEOpi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

ggvolc

𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation

rrapply

rrapply: revisiting base-R's rapply

beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

SVclone

A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

cellguide

🧭 Navigate single-cell RNA-seq datasets in your web browser.

scAnno

CNAqc

CNAqc - Copy Number Alteration (CNA) Quality Check package

tsd-api-client

Command line client for the TSD HTTP API

survomics

Tutorial on survival modeling with omics data

genieBPC

Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data

curatedPCaData

Bioconductor R-package: Curated Prostate Cancer Data

CellFunTopic

Functional Annotation for Single-Cell Transcriptomics

FuSViz

A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.

importbio

ssblazer

SSBlazer is the first attempt to exploit the deep learning technique for SSB site prediction based on genome-wide single-strand break sequencing data with single-nucleotide resolution.

MultiscaleHRD