SIB Swiss Institute of Bioinformatics (sib-swiss)

SIB Swiss Institute of Bioinformatics

sib-swiss

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Location:Switzerland

Home Page:https://www.sib.swiss

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SIB Swiss Institute of Bioinformatics's repositories

react-dotlet

Full JS version of Dotlet

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Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:16Issues:4Issues:0

pftools3

A suite of tools to build and search generalized profiles

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introduction-to-statistics-with-python-training

material for the "Introduction to Statistics with Python" SIB-training course

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advanced-statistics

Webpage for SIB's advanced statistics course

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pytorch-practical-training

pratrical crash course on pytorch by reproducing some published biology-related deep-learning models

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dh-cpa

The authors of the CPA DM font are Alain J. Desreumaux (CNRS, Paris, FR) and Tim Meylan (Professor of Typography, HEVS, Sierre, CH). Font Engineering and mastering : Alphabet Type (Berlin, DE). With Jérémy Formaz (Forme.ch, Sion, CH), under the lead of Claire Clivaz (SIB, CH). Author of theCPA DM KeymanWeb: Silvano Aldà (SIB, CH).

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dh-mr-mark16

This Github webpage describes the SNSF MARK16 Manuscript Room API (https://mr-mark16.sib.swiss). It has been updated in this June 2023 by Silvano Aldà (Core-IT, SIB) based on a first code written by Jonathan Barda (Core-IT, SIB). MARK16 (2018-2023) has been led by Claire Clivaz (PI) with Mina Monier, Elisa Nury and Priscille Marschall (DH+, SIB).

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micmap

Mapping of short reads in fastq format onto a reference

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dh-bobbiensis

This GitHub webpage describes the BOBBIENSIS Web Application, that has been created with the support of the SNSF MARK16 by Silvano Aldà (IT Developer, SIB), under the lead of Claire Clivaz (PI) and the collaboration of Elisa Nury (DH+, SIB). It reuses parts of the SNSF MARK16 API (https://github.com/sib-swiss/dh-mr-mark16).

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dh-dataviz

This Github webpage describes the SNSF MARK16 Dataviz API. It has been developed by Elisa Nury, in collaboration with Silvano Aldà and Claire Clivaz (PI), from Peripleo (Pelagios Network, https://pelagios.org). See https://dataviz-mark16.sib.swiss.

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etalk-docker

The eTalk is a multimodal digital editing tool. This new version of the code has been developed for the SNSF MARK16 project by Silvano Aldà and Claire Clivaz, SIB Swiss Institute of Bioinformatics, 2022-2023

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stack-builder

SIB software stack build automation

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summer-school-multiomics-data-analysis-and-integration

Summer School Multi-omics Data Analysis and Integration

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dsMIP

MIP/Datashield integration

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dsREST

datashield REST interface

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fedx-endpoint

SPARQL FedX of multiple SIB resources combined in one virtual one.

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Introduction-FAIR-RDM-DMP

Introduction to FAIR Research Data Management & Data Management Plan

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rdf4j-readonly-sail

An RDF4j salil optimized for UniProt like data that is to be contributed to eclipse.org

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samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

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spatial-transcriptomics

Documentation of spatial transcriptomics workshop

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