shz9 - Giters

Shadi's starred repositories

cvxpylayers

Differentiable convex optimization layers

Language:PythonApache-2.01788 56 113

torchsde

Differentiable SDE solvers with GPU support and efficient sensitivity analysis.

Language:PythonApache-2.01553 34 79

blitz-bayesian-deep-learning

A simple and extensible library to create Bayesian Neural Network layers on PyTorch.

Language:PythonGPL-3.0925 15 73

nflows

Normalizing flows in PyTorch

Language:PythonMIT834 29 49

ETM

Topic Modeling in Embedding Spaces

Language:PythonMIT540 14 36

Your browser's reference manager: automatic paper detection (Arxiv, OpenReview & more), publication venue matching and code repository discovery! Also enhances ArXiv: BibTex citation, Markdown link, direct download and more!

Language:JavaScriptMIT491 7 76

floweaver

View flow data as Sankey diagrams

Language:PythonMIT448 15 104

normalizing-flows

Neural Spline Flow, RealNVP, Autoregressive Flow, 1x1Conv in PyTorch.

Language:PythonMIT270 9 7

sgkit

Scalable genetics toolkit

Language:PythonApache-2.0229 16 691

cython-blis

💥 Fast matrix-multiplication as a self-contained Python library – no system dependencies!

Language:CNOASSERTION217 11 35

GenomicSEM

R-package for structural equation modeling based on GWAS summary data

Language:RGPL-3.0199 16 62

loftee

Language:PerlMIT174 17 93

msprime

Simulate genealogical trees and genomic sequence data using population genetic models

Language:PythonGPL-3.0173 19 1020

stdpopsim

A library of standard population genetic models

Language:PythonGPL-3.0122 14 690

proxmin

Proximal optimization in pure python

Language:PythonMIT111 8 11

matmul

Benchmarking matrix multiplication implementations

Language:C98 10 2

sicm-scheme-exercises

Exercises and notes on Structure and Interpretation of Classical Mechanics.

Language:SchemeApache-2.066 4 4

toulbar2

Exact optimization for cost function networks and additive graphical models

Language:C++MIT51 10 28

rss

RSS: Regression with Summary Statistics

Language:MATLABMIT50 25 3

hibayes

:swimmer: Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies

Language:C++GPL-3.048 5 19

bio2zarr

Convert bioinformatics file formats to Zarr

Language:PythonApache-2.025 5 136

ProPCA

Fast EM algorithm for a Probabilistic PCA model for Genotype data

Language:C++MIT21 5 11

mvsusieR

A new model and algorithm for multivariate Bayesian variable selection regression.

Language:Jupyter NotebookNOASSERTION21 10 46

ldshrink

ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium

Language:C++11 7 35

popstructure

Language:R10 1 1

zsparse

A library for zarr compressed sparse matricies

Language:PythonMIT5 10

gradvi

Gradient descent methods for Bayesian variational inference with mean field approximation.

Language:PythonMIT5 50

EntropyApproximator

Experimental tool for approximating high dimensional combinatorics

Language:C++300

CoupledRSCM

Code for the paper E. Raninen and E. Ollila, “Coupled regularized sample covariance matrix estimator for multiple classes,” in IEEE Transactions on Signal Processing, vol. 69, pp. 5681–5692, 2021, doi: 10.1109/TSP.2021.3118546.

Language:PythonMIT2 10

AdaWISH

Towards Efficient Discrete Integration via Adaptive Quantile Queries

Language:Python1 10