shuaizengMU

esm

OpenDevin

🐚 OpenDevin: Code Less, Make More

prot2token

This is the official repository of Prot2Token paper.

MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

Awesome-Large-Language-Model-in-Psychiatry

pykan

Kolmogorov Arnold Networks

Awesome-Graph-LLM

A collection of AWESOME things about Graph-Related LLMs.

GraphKAN-Graph-Kolmogorov-Arnold-Networks

scBSP

scBSP

scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordinates. It efficiently computes p-values for a given set of genes based on input matrices representing cell coordinates and gene expression data.

ProLLaMA

A Protein Large Language Model for Multi-Task Protein Language Processing

codealpaca

alpaca-lora

Instruct-tune LLaMA on consumer hardware

stanford_alpaca

Code and documentation to train Stanford's Alpaca models, and generate the data.

self-instruct

Aligning pretrained language models with instruction data generated by themselves.

llama-recipes

Scripts for fine-tuning Meta Llama3 with composable FSDP & PEFT methods to cover single/multi-node GPUs. Supports default & custom datasets for applications such as summarization and Q&A. Supporting a number of candid inference solutions such as HF TGI, VLLM for local or cloud deployment. Demo apps to showcase Meta Llama3 for WhatsApp & Messenger.

LLaMA-Factory

Unify Efficient Fine-Tuning of 100+ LLMs

Instruction-Tuning-Papers

Reading list of Instruction-tuning. A trend starts from Natrural-Instruction (ACL 2022), FLAN (ICLR 2022) and T0 (ICLR 2022).

FlagEmbedding

Retrieval and Retrieval-augmented LLMs

PEFT-SP

evo

DNA foundation modeling from molecular to genome scale

vllm

A high-throughput and memory-efficient inference and serving engine for LLMs

gemma

Open weights LLM from Google DeepMind.

S-PLM

S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure

TinyLlama

The TinyLlama project is an open endeavor to pretrain a 1.1B Llama model on 3 trillion tokens.

PMC-LLaMA

The official codes for "PMC-LLaMA: Towards Building Open-source Language Models for Medicine"

MUTarget

PromptPapers

Must-read papers on prompt-based tuning for pre-trained language models.

MedQA

Code and data for MedQA

OneLLM

[CVPR 2024] OneLLM: One Framework to Align All Modalities with Language