Shi Huang's repositories
pydata-notebook
利用Python进行数据分析 第二版 (2017) 中文翻译笔记
python-for-data-analysis
An introduction to data science using Python and Pandas with Jupyter notebooks.
adversarial-robustness-toolbox
Python library for adversarial attacks and defenses (evasion, poisoning) for neural networks with multiple framework support
aihn-ucsd
This repo is used to release code that is generated by the AI Horizons Network as needed to supplement conference papers and workshops.
assertthat
User friendly assertions for R
auto-sklearn
Automated Machine Learning with scikit-learn
biom-format
The Biological Observation Matrix (BIOM) Format Project
calour
exploratory and interactive microbiome analyses based on heatmaps
DEICODE
Robust Aitchison RPCA on sparse omics datasets
DMBC
A Bayes classifier based on the Dirichlet-Multinomial distribution
DOC
Dissimilarity Overlap Curve analysis
harrietr
An `R` package for various phylogenetic and evolutionary biology data manipulations
IMP_analyses
immigrant microbiome project related analyses
MAX-Facial-Age-Estimator
Detect faces in an image and estimate the age of each face
metadata_cleaning
metadata_clean is a metadata curation tool that applies rules form the user and passed as a yaml file
MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
philr
Phylogenetic Isometric Log Ratio
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
pytorch-seq2seq
An open source framework for seq2seq models in PyTorch.
q2-perc-norm
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
qiime2
Official repository for the QIIME 2 framework.
ranger
A Fast Implementation of Random Forests
rhapsody
Neural networks for microbe-metabolite interaction analysis
scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
tidybayes
Bayesian analysis + tidy data + geoms (R package)