shenwei356

Bringing-Old-Photos-Back-to-Life

Bringing Old Photo Back to Life (CVPR 2020 oral)

emoji-cheat-sheet

A markdown version emoji cheat sheet

miniforge

A conda-forge distribution.

repo

Arch Linux CN Repository

go-immutable-radix

An immutable radix tree implementation in Golang

wyhash

The FASTEST QUALITY hash function, random number generators (PRNG) and hash map.

go-radix

Golang implementation of Radix trees

clinker

Gene cluster comparison figure generator

go-adaptive-radix-tree

Adaptive Radix Trees implemented in Go

fastmod

A C/C++ header file for fast 32-bit division remainders (and divisibility tests) on 64-bit hardware.

fastdiv

Fast division, modulus and divisibility checks in Go for divisors known only at runtime.

sylph

ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.

dnaapler

Reorients assembled microbial sequences

vers

very efficient rank and select

ptrie

A prefix tree implementation in go

prefixtree

A prefix tree (trie) implementation in go

centrifuger

Classifier for metagenomic sequences using FM-index with run-block compressed BWT.

skDER

skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.

Hairsplitter

Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.

Movi

Fast and cache-efficient full-text pangenome index

quasitools

Quasitools is a collection of tools for analysing viral quasispecies data.

LexicHash

A novel method for sequence similarity estimation

sourmash_plugin_branchwater

Rust-based plugin that enables fast, multithreaded sourmash operations

MFD-ILP

Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.

classification_benchmark

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

hivfacts

Structured knowledge base of HIV-1/HIV-2.

metabench

MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.

cluster_files

cluster files into multiple directories by creating symbolic links or moving files

splot

Simple Sequence Plotter

csv