shenwei356

ShiArthur03

hanzi-writer

Chinese character stroke order animations and practice quizzes

slackdump

Save or export your private and public Slack messages, threads, files, and users locally without admin privileges.

rnr

A command-line tool to batch rename files and directories

eat

I'm a CPU and memory eating monster. 一个吃 CPU 内存的怪兽。

ariba

Antimicrobial Resistance Identification By Assembly

FASTGA

Pairwise whole genome aligner

perfect-bioinformatic-tools

What should perfect bioinformatic tools be like?

omap

Ordered map

bio-data-zoo

Example genomics data for tool developers

suggest

Top-k Approximate String Matching.

hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

mettannotator

wfa

Wavefront alignment algorithm (WFA) in Golang

xgt

Efficient and fast querying and parsing of GTDB's data

minimizer-iter

Iterate over minimizers of a DNA sequence

top

TopN collector

lemur

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

seqsum

Robust individual and aggregate checksums for nucleotide sequences

minimizers

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

MEMO

MEMO: MEM-based pangenome indexing for k-mer queries

streamvbyte-simdgo

A Stream VByte implementation in Go leveraging SIMD techniques

melon

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

wavefront-aln

A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring

dlb-kmer-sampling

Optimal distance lower bound k-mer sampling.

ropebwt3

Construction and utility of BWT for DNA string sets

ICTV-TaxonomyChallenge

editdistancek

LMS algorithm for computing edit distance with SIMD optimizations

SubseqHash2

Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

sketchlib.rust

Rust reimplementation of pp-sketchlib