bioinfo_100kownboy's repositories
SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
Luminal-SNF
Multi-omic study of luminal breast cancer
MVI_HCC
These are code and scripts for MVI+ HCC scRNA-seq analysis.
pan-NK
These are scripts for pan-cacner NK cells analyses.
SingCellaR
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
scrna-recom
collected resource for scRNA-seq analysis
SpatialTranscriptomics
Spatial Transcriptomic Analysis of OSCC samples
go-proxy-bingai
用 Vue3 和 Go 搭建的微软 New Bing 演示站点，拥有一致的 UI 体验，支持 ChatGPT 提示词，国内可用。
PERCEPTION
Utilizing single-cell omics from patients tumor to predict response and resistance.
smk_sc_lr
Snakemake pipeline for single-cell long-read sequencing
single-cell-best-practices-zh
单细胞最佳实践-中文版
scDEAL
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
TCM
Codes used in pan-T cell analysis
scPDAC_code
R code used to analyze single cell PDAC data
L_Baldwin_Thesis
Repo for scripts associated with the thesis "Unpacking breast cancer immune evasion cell by cell" by Louise Baldwin
NSCLC_study
Non-small cell lung cancer multi modal analysis (single nuclei, tcr, lpWGS, spatial)
TensorLayerX
TensorLayerX: A Unified Deep Learning and Reinforcement Learning Framework for All Hardwares, Backends and OS.