bioinfo_100kownboy's repositories
gganimate-ig
Use ggplot and gganimate to visualize the geographic growth of Instagram over time.
psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
SomaticSignatures
The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.
Picard-Manual-CN
Picard's manual in Chinese - Picard中文使用手册
Bowtie2-Manual-CN
Bowtie2's manual in Chinese - Bowtie2中文使用手册
BWA-Manual-CN
BWA's manual in Chinese - BWA中文使用手册
breakdancer
SV detection from paired end reads mapping
pandas-ply
functional data manipulation for pandas
mutect
MuTect -- Accurate and sensitive cancer mutation detection
genotype-tools
Scripts to facilitate processing of genotyping data.
THetA
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.
bioinformatics
Tools for bioinformatics
CUHK-R
R courses for MSc in Genomics and Bioinformatics of CUHK
bgiR
an R package for R training at BGI-Tech
ngs-workflows
Source code, data and documentation to demonstrate automation in NGS data analysis
biolib
BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages