Scott Hazelhurst's repositories
h3acnvcalls
Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts
h3africa-structural-cnv
Scripts and results for the H3Africa paper on structural and copy number variants
recall
Deepvariant + GLnexus
bs
Illumina Basespace Download
ssh
Some helpful configs for using ssh
witsmcq
For providing feedback to students using the Wits MCQ card system
covid19za
COVID 19 Data and Dashboard for South Africa
speedseq
A flexible framework for rapid genome analysis and interpretation
idat
Simple code to manage idat files
synth2
Workflow for creating artificial GWAS data sets based on real data
slurmgluster
Taking jobs to storage
baobab.lims
Baobab LIMS is an open-source laboratory information management system (LIMS)
useful
odds and ends that I use for my own work, not intended for others but go for it
stratify
Teaching example for CI (Jenkins and Travis)
public-dockers
Docker files
ymthaplotools
Simple workflow for assigning Y-haplogroups using the AMY-tree program
ltB
YANLT
GAS_Scripts_Reference
Scripts and reference files to type Group A Streptococcus