shaze

nextflow-course

wcdest

Automatically exported from code.google.com/p/wcdest

genesis

Population structure and PCA viewer

GS

pbcall

Simple quick and dirty workflow for calling PacBio data

baobab.lims

Baobab LIMS is an open-source laboratory information management system (LIMS)

bs

Illumina Basespace Download

covid19za

COVID 19 Data and Dashboard for South Africa

dockers

g2

GAS_Scripts_Reference

Scripts and reference files to type Group A Streptococcus

h3acnvcalls

Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts

h3africa-structural-cnv

Scripts and results for the H3Africa paper on structural and copy number variants

haggadah

idat

Simple code to manage idat files

JanOw_Dependencies

ltB

YANLT

misc

public-dockers

Docker files

recall

Deepvariant + GLnexus

sample-c

slurmgluster

Taking jobs to storage

speedseq

A flexible framework for rapid genome analysis and interpretation

ssh

Some helpful configs for using ssh

stratify

Teaching example for CI (Jenkins and Travis)

synth2

Workflow for creating artificial GWAS data sets based on real data

useful

odds and ends that I use for my own work, not intended for others but go for it

weights

witsmcq

For providing feedback to students using the Wits MCQ card system

ymthaplotools

Simple workflow for assigning Y-haplogroups using the AMY-tree program