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Michael Shaffer (shafferm)

shafferm

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Company:Wrighton Lab, Colorado State University

Location:Fort Collins, CO

Home Page:https://shafferm.github.io/

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lozuponelab

Michael Shaffer's starred repositories

deepbgc

BGC Detection and Classification Using Deep Learning

Language:Jupyter NotebookLicense:MITStargazers:119Issues:0Issues:0

join_asvbins

Language:PythonLicense:GPL-3.0Stargazers:2Issues:0Issues:0

rosella

Metagenomic Binning Algorithm

Language:RustLicense:BSD-3-ClauseStargazers:38Issues:0Issues:0

picrust2

Code, unit tests, and tutorials for running PICRUSt2

Language:PythonLicense:GPL-3.0Stargazers:310Issues:0Issues:0

metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

Language:Jupyter NotebookLicense:LGPL-3.0Stargazers:47Issues:0Issues:0

Balrog

Bacterial Annotation by Learned Representation of Genes

Language:Jupyter NotebookLicense:MITStargazers:54Issues:0Issues:0

scalene

Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals

Language:PythonLicense:Apache-2.0Stargazers:11457Issues:0Issues:0

stat_rethinking_2020

Statistical Rethinking Course Winter 2020/2021

Language:RStargazers:651Issues:0Issues:0

awesome-graph-classification

A collection of important graph embedding, classification and representation learning papers with implementations.

Language:PythonLicense:CC0-1.0Stargazers:4721Issues:0Issues:0

MLgroup

Wiki for CUD2V Analytics core Machine Learning Reading Group

Stargazers:8Issues:0Issues:0

ymp

Flexible omics pipeline

Language:PythonLicense:GPL-3.0Stargazers:18Issues:0Issues:0

dada2_to_qiime

Convert DADA2 seqtabs to QIIME files

Language:PythonStargazers:3Issues:0Issues:0

MMinte

Language:PythonStargazers:16Issues:0Issues:0

cpython

The Python programming language

Language:PythonLicense:NOASSERTIONStargazers:61408Issues:0Issues:0

MetaMapR

Network mapping tool for metabolomics + data.

Language:HTMLLicense:NOASSERTIONStargazers:47Issues:0Issues:0

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

Language:RLicense:LGPL-3.0Stargazers:459Issues:0Issues:0

discordant

Language:RStargazers:10Issues:0Issues:0

picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Language:PythonLicense:GPL-3.0Stargazers:88Issues:0Issues:0