sgosline

mpnstXenoModeling

MPNST Xenograft Modeling Framework

panCancerProteomics

AMLDrugCombinations

This study measures the impact single drugs and combinations of drugs in vitro.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

covid19signatures

dNFLandscape

Landscape of Dermal NF

Genie

Validation and processing of GENIE files: https://www.synapse.org/genie

hyphalnet

Basic implementation of community detection in networks

kf-somatic-workflow

:microscope: Somatic workflow for Kids-First

leapR

leidenalg

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

louvain-igraph

Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.

metabolomics-integration

Documents required for the MANA 2023 metabolomics integration workshop.

new-project

NEXUS

Neurofibromatosis EXperiment Unification Site

OmicsIntegrator2

Prize-Collecting Steiner Forests for Interactomes

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

prelude

Prelude is an enhanced Emacs 24 distribution that should make your experience with Emacs both more pleasant and more powerful.

rare-disease-workflows

Workflows for processing rare disease data on Synapse.

rootstock

Clone me to create your Manubot manuscript

sacb-meeting

sage-workflows-sandbox

In-progress and example CWL tools/workflows

sandbox-provisioner

An service to auto provision resources on AWS scicomp

scRNAseqQC

Created docker image, CLI, and CWL workflow to enable the qc tool to be called remotely.

synapse-workflow-cwl-tools

CWL tools for wrapping other tools with Synapse download and upload steps.

tdlnRadProt

Integrative modeling of proteomics and radiomics of tumor draining lymph nodes

test-pipeline

EloML

R package EloML: Elo rating system for machine learning models

hierarchical-hotnet

Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.

MSnSet.utils

custom wrappers of frequently used R code