sgblanch / ReadSeq

Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Quickstart
==========
ant jar
java -jar dist/ReadSeq.jar

Description
============
Sequence reading library developed by the Ribosomal Database Project.  Can handle genbank, embl, fasta, fastq, sff and sto files.  Can read from files or streams, and can handle indexing files.

USAGE: ReadSeqMain <subcommand> <subcommand args ...>
	random-sample  - random select a subset or subregion of sequences
	reverse-comp   - reverse complement sequences 
	rm-dupseq      - remove identical or substring of sequences
	select-seqs    - select or deselect sequences from a file
	split          - split sequences
	to-fasta       - convert to fasta format
	to-fastq       - convert to fastq format

About

Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

License:GNU General Public License v3.0


Languages

Language:Java 100.0%