sgblanch's repositories
AlignmentTools
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
canu
A single molecule sequence assembler for genomes large and small.
CTSgetR
R interface to Chemical Translation Service (CTS)
DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
degenprime-test
Experiment in python frontends and packaging
FungeneUtils
FungeneUtils package
LinkageMapView
Plot Linkage Group Maps with QTLs
lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
MetaMapR
Network mapping tool for metabolomics + data.
pbs-scripts
User prologue and epilogue scripts for torque-based clusters
ProbeMatch
Tools for finding (and removing) DNA/RNA primers in sequence reads.
ReadSeq
Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
recongo
Reconciliation Service API implementation
SeqFilters
Java filtering framework for sequence data
smartie-sv
calling SVs from Blasr contig level alignments
TaxonomyTree
TaxonomyTree building and traversal utility classes.