sgblanch's repositories
DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
degenprime-test
Experiment in python frontends and packaging
TaxonomyTree
TaxonomyTree building and traversal utility classes.
SeqFilters
Java filtering framework for sequence data
ReadSeq
Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
ProbeMatch
Tools for finding (and removing) DNA/RNA primers in sequence reads.
FungeneUtils
FungeneUtils package
AlignmentTools
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
smartie-sv
calling SVs from Blasr contig level alignments
lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
recongo
Reconciliation Service API implementation
LinkageMapView
Plot Linkage Group Maps with QTLs
pbs-scripts
User prologue and epilogue scripts for torque-based clusters
canu
A single molecule sequence assembler for genomes large and small.
CTSgetR
R interface to Chemical Translation Service (CTS)
MetaMapR
Network mapping tool for metabolomics + data.