Shawn P. Serbin's repositories
ctsm_containers
A work-in-progress repository for developing builds of the CTSM and CLM-FATES models
Prototype_Multi-Species_Leaf_Vcmax_PLSR_Model
A prototype multi-species spectra-trait PSLR model for estimating leaf Vcmax from spectral data
Spectra_PLSR_models
A repository of PLSR regression models relating leaf or canopy spectra to plant properties
above-airborne-avirisng-python
Python: Work with hyperspectral imagery from AVIRIS-NG collected during ABoVE airborne campaigns
canopyLazR
R package to estimate leaf area density (LAD) and leaf area index (LAI) from airborne LiDAR point clouds
elm_containers
A work-in-progress repository for developing builds of the ELM and ELM-FATES models
ForestESS
ForestESS simulates plant demographic processes (e.g., growth, reproduction, and mortality), competition for light and soil resources, and soil biogeochemical processes. The codes are from the version of LM3-PPA used to simulate the forest successional dynamics in the paper of Weng, E., Farrior, CE, Dybzinski, R, and Pacala, SW, et al. 2016 Global Change Biology.
layeredCanopyTwoStream
Radiative transfer code for vertically inhomogeneous canopies using the Meador and Weavor two stream approximation with adding
NASA_FFT_Leaf_Spectra-Trait_Models
Leaf spectra-trait PLSR models to estimate foliar functional traits from fresh leaf spectroscopy data. The models were developed using data collected as part of the NASA Forest Functional Types (FFT) project (Serbin et al. 2014)
spectrolab
Dealing with spectral data in R
BRDF_modelling
BRDF modelling using linear kernel models
cime
Common Infrastructure for Modeling the Earth
containers
Sandbox for developing various docker/singularity/vagrant containers for models, such as CTSM
dropbox-sdk-python
Python SDK for Dropbox API v2.
dvm-dos-tem
A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.
ED2
Ecosystem Demography Model
forestr
forestr R package
lidR
R package for airborne LiDAR data manipulation and visualisation for forestry application
matlab-script-for-clm-sparse-grid
MATLAB scripts to create sparse grid surface dataset and domain file for E3SM Land Model and CLM