Terrestrial Ecosystem Science and Technology (TEST) Group (Active Archive)'s repositories
LeafGasExchange
An R package for fitting and simulating leaf level gas exchange
R-Canopy_Photosynthesis
Testbed for canopy scaling and modeling of Photosynthesis and GPP
R-GasExchange
Simple scripts for processing LiCor 6400 gas exchange data
UniSpec_Processing
Python code for processing the output of the Unispec-DC spectrometer
exploringCOGs
A sandbox of scripts and data to explore the use of cloud-optimized geotiff datasets to facilitate direct data ingest into analysis workflows
hytools_helpers
A set of examples and scripts to help with using EnSpec_hytools
Matlab-Canopy_Photosynthesis
Testbed for canopy scaling and modeling of Photosynthesis and GPP
Viskari_etal_ED2_radiation_uncertainty
The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling
Lamour_et_al_2021_Letter_on_Marquez_et_al_2021_paper
Implementation of Marquez et al. 2021 new gas exchange theory
meeting_demos
Repository for examples used in meetings or presentations
Ely_etal_2019_JournalOfExperimentalBotany
Leaf-level Spectra-trait PLSR models to estimate key leaf traits associated with source–sink balance and carbon–nitrogen status using leaf optical properties
example_gee_uas_scripts
Small repository of example Google Earth Engine Jupyter Notebooks
gee_examples
A small repo containing GEE, rgee, and Python GEE examples
ngeearctic_elm_containers
E3SM Land Model (ELM) containers for NGEE-Arctic
NGSapFlux
Next-generation Sap Flux. Repository for storing schematics, code, and other information related to the development of custom sap flux sensors
NGSapFlux_r
An R package for working with and processing sap flux generated using the BNL TEST group NGSapFlux sensor package
R-UniSpecDC-Tools
A toolkit for processing UniSpec-DC spectral files
Rogers_etal_NGEEArctic_LightResponse
Repository containing LiCor photosynthetic light response curve data, R scripts for fitting the data, and our script for calculating leaf absorptance from measured reflectance
UniSpec_Trigger
Python scripts for aquiring data from Unispec-DC spectrometer
Wu_etal_2019_NewPhytologist
Leaf-level spectra-trait PLSR models to estimate leaf age and Vcmax of tropical tree species using measurements of leaf reflectance