Nick Semenkovich (semenko)

semenko

Geek Repo

Company:Medical College of Wisconsin

Location:Milwaukee

Home Page:https://nick.semenkovich.com

Twitter:@semenko

Github PK Tool:Github PK Tool


Organizations
BradnerLab
Chaudhuri-Lab
ClinDesk
GordonLab
mcwdsi
mit
TheMITTech

Nick Semenkovich's starred repositories

TabPFN

Official implementation of the TabPFN paper (https://arxiv.org/abs/2207.01848) and the tabpfn package.

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stats

macOS system monitor in your menu bar

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xlmhglite

XL-mHG Lite: A Semiparametric Test for Enrichment in Ranked Lists, light implementation

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yellowbrick

Visual analysis and diagnostic tools to facilitate machine learning model selection.

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audiocraft

Audiocraft is a library for audio processing and generation with deep learning. It features the state-of-the-art EnCodec audio compressor / tokenizer, along with MusicGen, a simple and controllable music generation LM with textual and melodic conditioning.

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fq

Command line utility for manipulating Illumina-generated FASTQ files.

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NetAct

Network construction Algorithm

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Scissor

Scissor package

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deepchecks

Deepchecks: Tests for Continuous Validation of ML Models & Data. Deepchecks is a holistic open-source solution for all of your AI & ML validation needs, enabling to thoroughly test your data and models from research to production.

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reflex

🕸️ Web apps in pure Python 🐍

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ruff

An extremely fast Python linter and code formatter, written in Rust.

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Ibex

Using BCR and expression for sequence embedding

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kbd-audio

🎤⌨️ Acoustic keyboard eavesdropping

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CoolBox

Jupyter notebook based genomic data visualization toolkit.

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TCC-GUI

📊 Graphical User Interface for TCC package

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pytorch-widedeep

A flexible package for multimodal-deep-learning to combine tabular data with text and images using Wide and Deep models in Pytorch

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TabularDataProblem

Classification in TabularDataset

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tabulardl-benchmark

Benchmark tabular Deep Learning models against each other and other non-DL techniques

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chromoformer

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

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tabnet

PyTorch implementation of TabNet paper : https://arxiv.org/pdf/1908.07442.pdf

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tf-TabNet

A Tensorflow 2.0 implementation of TabNet.

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tabnet-modified

Modification of TabNet as suggested in the Medium article, "The Unreasonable Ineffectiveness of Deep Learning on Tabular Data"

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RNAlysis

Analyze your RNA sequencing data without writing a single line of code

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mice

Multivariate Imputation by Chained Equations

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pics

File formats dissections and more...

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spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

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PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

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