This package includes all steps that we perform post-EWAS in the Diabetes & Obesity group at the Telethon Kids Institute. It contains Manhattan and Volcano plots, DMR with DMRcate
, gene annotation and pathway analysis via methylGSA
and missMethyl
.
The package can be installed via the following command in R or RStudio:
devtools::install_github("Hobbeist/TKIepiR", build_vignettes=T)
This package includes the following functions:
annotateCpG()
ManhattanPlot()
VolcanoPlot()
DMRfinder()
geneSet()
Maintainer: Sebastian Rauschert Sebastian.Rauschert@telethonkids.org.au