How Would OHBM SEA-SIG Responsibly Do Reproducible Analysis
Setup
-
Clone the repo:
$ git clone git@github.com:sebastientourbier/tutorial_carbonfootprint_neuropipelines.git -
Install the conda environment with codecarbon, datalad, datalad_containers, jupyter notebook:
$ cd tutorial_carbonfootprint_neuropipelines $ conda env create -f environment.yml -
If you are on Mac or Windows, you will need to install the Intel Power Gadget to make codecarbon happy
Run the notebook
- Activate the conda environment, launch Jupyter Notebook, and open the ipython notebook:
$ conda activate neuropipelines-env (neuropipelines-env)$ jupyter notebook