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pi-hole

A black hole for Internet advertisements

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vim

The official Vim repository

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harpoon

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destreamer

Save Microsoft Stream videos for offline enjoyment.

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bash-language-server

A language server for Bash

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gt

Easily generate information-rich, publication-quality tables from R

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STAR

RNA-seq aligner

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jdupes

A powerful duplicate file finder and an enhanced fork of 'fdupes'.

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vim-matchup

vim match-up: even better % :facepunch: navigate and highlight matching words :facepunch: modern matchit and matchparen. Supports both vim and neovim + tree-sitter.

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seqtk

Toolkit for processing sequences in FASTA/Q formats

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git-messenger.vim

Vim and Neovim plugin to reveal the commit messages under the cursor

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nvim-compe

Auto completion Lua plugin for nvim

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skimr

A frictionless, pipeable approach to dealing with summary statistics

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vim-vsnip

Snippet plugin for vim/nvim that supports LSP/VSCode's snippet format.

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singularity

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

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tidylog

Tidylog provides feedback about dplyr and tidyr operations. It provides wrapper functions for the most common functions, such as filter, mutate, select, and group_by, and provides detailed output for joins.

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vim-language-server

VImScript language server, LSP for vim script

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rlang

Low-level API for programming with R

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UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

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Liftoff

An accurate GFF3/GTF lift over pipeline

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figtree

Automatically exported from code.google.com/p/figtree

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Rserve

Fast, flexible and powerful server providing access to R from many languages and systems

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ggbio

Grid and ggplot2 based visualization for biological data

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tree-sitter-r

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scater

Clone of the Bioconductor repository for the scater package.

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remoter

Control a remote R session from your local R session.

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snakemake-github-action

A Github action for running a Snakemake workflow

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SmkTemplate

A template repository for snakemake workflows.

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compe-latex-symbols

Autocomplete LaTeX symbol into your text via nvim-compe

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HDF5Array

HDF5 backend for DelayedArray objects

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