seandavi

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

pubmed-llm-classifier

gpt-examples

terraform_vertex_ai_project

Terraform for allowing gcp Vertex AI for a user

bioconductor_docker

Docker Containers for Bioconductor - NEW!

CuteCats

microbiome_compendium_website

Website for the Human Microbiome Compendium

nextflow

A DSL for data-driven computational pipelines

curatedMetagenomicDataProcessing

2023-11-27-CUNY-json-data

Brief overview of JSON data and web tech for course at CUNY

2023-12-11-sql-intro-cuny

Brief introduction to SQL using quarto, duckdb, and R

B2AITeamingScratchpad

B2AITeamingScratchpad

bioc-builder

bioc_bib_chapter_2023

CARDdealr

COCancerScope

Colorado Cancer Catchment information portal

CSHLData2023

Home page for CSHL Statistical Methods for Genome Scale Data, 2023 edition

cu_profile_utils

CURCDocumentation

Repository holding a wiki for Research Computing tutorials

dagster-polars

Polars integration for Dagster

dbt-coves

CLI tool for dbt users adopting analytics engineering best practices.

flatiron_snowflake_loader

load flatiron zip file deliveries to slowflake data warehouse

huggingface_notebooks

Notebooks using the Hugging Face libraries 🤗

jaffle-shop-dbt

An open source sandbox project exploring dbt workflows via a fictional sandwich shop's data.

kickstart.nvim

A launch point for your personal nvim configuration

ncbi_mesh_parser

ncbi_mesh_parser

omics-metadata-json-service

Web services for interrogating various omics-related resources and returning results as json responses.

pubsub_example

seandavi-blog

blog

sqlmesh

SQLMesh is a data transformation framework that brings the benefits of DevOps to data teams. It enables data scientists, analysts, and engineers to efficiently run and deploy data transformations written in SQL or Python.

vim-dadbod

dadbod.vim: Modern database interface for Vim