MSIsensor implementation for DNAnexus platform
Detailed info about the author and copyright for this tool is available at
https://github.com/ding-lab/msisensor
Citations:
Middha, Sumit, Liying Zhang, Khedoudja Nafa, Gowtham Jayakumaran, Donna Wong, Hyunjae R. Kim, Justyna Sadowska, et al. “Reliable Pan-Cancer Microsatellite Instability Assessment by Using Targeted Next-Generation Sequencing Data.” JCO Precision Oncology, no. 1 (September 2017): 1–17. https://doi.org/10.1200/PO.17.00084.
Niu, Beifang, Kai Ye, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl, and Li Ding. “MSIsensor: Microsatellite Instability Detection Using Paired Tumor-Normal Sequence Data.” Bioinformatics 30, no. 7 (April 1, 2014): 1015–16. https://doi.org/10.1093/bioinformatics/btt755.
Zehir, Ahmet, Ryma Benayed, Ronak H. Shah, Aijazuddin Syed, Sumit Middha, Hyunjae R. Kim, Preethi Srinivasan, et al. “Mutational Landscape of Metastatic Cancer Revealed from Prospective Clinical Sequencing of 10,000 Patients.” Nature Medicine 23, no. 6 (June 2017): 703–13. https://doi.org/10.1038/nm.4333.
Todo/Questions:
- figure out how to get the asset onto different (cloud) region and have different record id
- better app info page (right now it's just readme.md on the left and settings on the right on applet settings page) the "details" section in the dxapp.json doesn't show up on the left side of the applet info page
- how does app build handle applet and asset bundle or should I even worry about that?