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Stanley Lan's repositories

Implementation of MSIsensor for DNAnexus platform

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WDL and CWL compiler for the DNAnexus platform

Language:ScalaApache-2.0000

CLI tool to manage the download of large quantities of files from DNAnexus

Language:GoApache-2.0000

FUSE filesystem for the DNAnexus storage system

Language:GoApache-2.0010

Workflow Description Language compiler for the DNAnexus platform

Language:JavaApache-2.0010

Official code repository for GATK versions 4 and up

Language:JavaBSD-3-Clause010

Lacer: Accurate Base Quality Score Recalibration using Linear Algebra

Language:PerlMIT010

One stop MIP design and analysis

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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language:NextflowMIT000

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A single-cell RNAseq pipeline for 10X genomics data

Language:NextflowMIT000

Workflow Description Language - Specification and Implementations

BSD-3-Clause000

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

MIT000

Ximmer is a system for CNV calling on exome and targeted genomic sequencing

Language:JavaScriptLGPL-2.1000