scipion-chem / scipion-chem-blast

Plugin to run blast in scipion

BLAST plugin

Documentation under development, sorry for the inconvenience

This is a Scipion plugin that offers different blast tools.

Therefore, this plugin allows to use programs from the blast software suite within the Scipion framework.

Full documentation to this plugin can be found in the official documentation page.

Install this plugin

You will need to use Scipion3 to run these protocols.

1. Install the plugin in Scipion

BLAST+ is installed automatically by scipion.

• Install the stable version (Not available yet)

  Through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

  or

scipion3 installp -p scipion-chem-blast

• Developer's version

  1. Download repository:

  git clone https://github.com/scipion-chem/scipion-chem-blast.git
  

  2. Switch to the desired branch (master or devel):

  Scipion-chem-blast is constantly under development and including new features. If you want a relatively older an more stable version, use master branch (default). If you want the latest changes and developments, user devel branch.

  cd scipion-chem-blast
  git checkout devel
  

  3. Install:

  scipion3 installp -p path_to_scipion-chem-blast --devel