R package. Collection of custom functions that I commonly apply.
The following functions are used for analyzing MIC assays for measuring antibiotic levels in fecal water
- importVictor
- checkCtrl
- plateAdjust
- growthCurve
- survivalCurve
- calcSurvival
- calcabx
The following functions are used for data visualization
- perform_pca
- pca_score
- pca_loading
- pca_biplot
- generate_heatmap
The following functions are used for analyzing Sanger sequences (first iteration of isolationWorkflow)
- abif_fasta
- parse_blast
Other useful functions
- genbymultiple (generate number sequence by multiples. Useful for analysis of dilution series)
Install Instructions:
# if devtools package not yet installed, install devtools first
install_packages('devtools')
# loading devtools library
library(devtools)
# download and install isolationWorkflow
install_github("schyen/somefxns")
# load somefxns package
library('somefxns')