schyen's repositories
parse_blast
function to read xml output of NCBI blast and produce a csv file of the hits based on query cover, evalue, percent identity and total score
abif_fasta
function to read abif files and convert to one fasta file with trimming option available
adventofcode_2019
exercises for advent of code 2019
isolationWorkflow
R package to help with workflow of building a strain library during isolation experiments. Allows you to preview, trim Sanger sequences before organizing into a fasta file that is ready to BLAST. Reads Blast results, and aligns sequences in order to build and curate a strain library
MetaboMate
All you need for NMR-based metabolic profiling with R!
oligotype_input
function to create a file that is compatible for oligotyping by Meren using the output files of mothur
Language:RMIT000
pipeline_tutorial1
example pipeline for mara[py]thon