schmiedc

auto_qc

ImageJ 1.x plugin for automatic microscopy quality control - an ImageJ plugin prototype

SynActJ

ImageJ plugin for analyzing synaptic vesicle dynamics using Synapto-pHluorin.

OrgaMapper

ImageJ plugin for detecting and mapping organelles within a cell

snakemake-workflows

snakemake workflows produced, tested and used at MPI CBG

pHluorin-Rscripts

R scripts for processing and visualizing data generated by the pHluorin workflow

pipeline_3.0

cellDisplacement_DZNE

scripts for assessment of neuronal and glial pathologies

cerebellar_organoid

Machine learning approach and analysis scripts for analyzing organoids

OrgaMapper_Rshiny

Rshiny workflow for processing OrgaMapper results

SynActJ_Shiny

checklist_images_analysis

Test github pages site for Quarep-Limi WG12

clij2

GPU-accelerated image processing for everyone

first-test

napari plugin test

imagej.github.io

GitHub Pages for ImageJ

list-of-update-sites

The update sites ImageJ knows about automatically

MeasureInt

Measure and analyse mean intensity in nuclei and cell segmentation

minimal

Minimal is a Jekyll theme for GitHub Pages

NEUBIAS_AnalystSchool2019

NEUBIAS Bioimage Analyst School 2019

NEUBIAS_AnalystSchool2020

pipeline_2.0

qt-test

playground for qt

SPIM_Registration

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

teaching-dl-course-2020

EMBL Deep Learning course 2020-21 exercises and materials