savvas-paragkamian / crete_soil_microbiome

This repository contains scripts for the analysis of the Island Sampling Day of Crete 2016, a project of the soil microbiome.

savvas-paragkamian/crete_soil_microbiome Issues

replace the raster package with stars or terra
Closed a month ago1
Geology Map colors
Updated 9 months ago
Phylogenetic tree of Cretan microbiome
Closed 7 months ago1
Which are the dates of DNA extraction and library preparation?
Updated 9 months ago
make a new functions script
Closed 8 months ago
Add new layers of NDVI, Global Aridity index, soil moisture and land temperature
Closed a month ago1
Create a conda environment for the isd workflow
Updated 9 months ago
Statistics and analysis suggestions
Updated 10 months ago
Consider adding FAPROTAX
Closed 9 months ago1
pH is missing from ENA metadata
Updated a year ago
Sample missing from ENA
Updated 9 months ago
Files of negative and positive controls are not in ENA
Updated 7 months ago1
remove primers prior loading to DADA2
Closed 10 months ago1
Adds \r character in strings in 3rd column
Updated a year ago
asv's to taxonomy
Closed a year ago1
merge all jobs finalTable.tsv files
Closed a year ago2
U-CIE for colouring samples of ISD
Closed 9 months ago2
Parse all xml files from the sample attributes
Closed a year ago2
Open first ticket in HPC for PEMA
Closed a year ago3