saramonzon

iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

beacon-2.x

Beacon v2.x

bioconda-recipes

Conda recipes for the bioconda channel.

builder

a template ready to go to easily build, test, and deploy reproducible SCIF containers!

BU-ISCIII

Our Wiki and main public documentation repository.

buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

circleci-docs

Documentation for CircleCI.

circos_msa_conservation

datasets

Benchmark datasets for WGS analysis

django_utils

Custom and useful features for django

flowcraft

A Nextflow pipeline assembler for genomics :whale::package:

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

iSkyLIMS_clinic

iSkylims_core

iSkyLIMS home website for information and links purposes

iSkyLIMS_drylab

iSkyLIMS_wetlab

This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.

multi-package-containers

Testing building mulled containers for multi-requirement tools.

NGI-ChIPseq

Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

relecov-platform

relecov-tools

rnatoy.scif

A proof of concept RNA-Seq pipeline with Nextflow

seek-destroy-nf

SEH2Bioinfo

Sitio web del Simposio de Estudiantes Hispanohablantes de Bioinformática y Biología Computacional | Website of the Spanish-Speaking Students Symposium in Bioinformatics and Computational Biology

smrnaseq

Analysis pipeline for small-RNA sequencing data.

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

sublime-installer

A Sublime Text Editor Installer made in shell script for the 2.0.1 version

taranis

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

training-material

A collection of Galaxy-related training material

tutorials

:blue_book: 🌍 An interesting collection of GIS related tutorials