Sarah Arcos's repositories
m6A_Exploratory
Re-analyzing published m6A-seq and PAR-CLIP data
CHIKV_VIRCLASP_Analysis
New analysis of CHIKV data after review. Removes medium confidence dataset and adds additional criteria for "binding proteins"
VIR_CLASP-Analysis
Analysis of VIR-CLASP data
CHIKV_UpSet
Files to use the online version of UpSet
CLASP_IFN_Analysis
CLASP in U2OS cells, control or with IFN treatment
CodeClub_09122021
Lauring Lab Code Club: Shiny Apps
IAV_VIRCLASP_Analysis
Analysis of IAV VIR-CLASP data (limited conditions)
r_fridays
Weekly meetings to solve common biochem/biology data analysis problems
rfridays_data_simulation
Simulating data for R fridays. Original datasets will not be posted, only code for simulation
saraharcos.github.io
Personal Website
DANG_qPCR_example
An example qPCR dataset to use for plotting a standard curve and calculating qPCR efficiency
hello-world
first repository
ImmuneTargets_ELAVL1_2020
Overlap of PAR-CLIP, RIP-Seq, RNA-Seq and SLAM-Seq to discover the funcitonal targets of RBP ELAVL1 during an innate immune response
Lab-Scripts
Bench Automation
PARCLIP_IDR
Adding IDR calculation to the PARpipe published by the Ohler lab: https://github.com/ohlerlab/PARpipe
PARcos
shiny app for exploring PAR-CLIP data
PARcos_dashboard
PARcos but the shiny dashboard version
un-report
Carpentries demo project