saraharcos

Sarah Arcos's starred repositories

Positron, a next-generation data science IDE

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A package for detecting coevolving positions in a sequence alignment, using COsubstitution MAPping.

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A shiny app to explore all of Ann Arbor's trees

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WebGL protein viewer

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Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq

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My CV built using RMarkdown and the pagedown package.

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Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

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Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model

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For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).

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Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

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