Samuel Marsh's repositories
scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Marsh_et-al_2022_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in Marsh et al., 2022
Marsh_et-al_2020_scRNAseq_Dissociation_Artifacts
Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1
Hammond-et-al_2019_Microglia_scRNAseq
Repository for "pseudo"-objects based on analysis in Hammond et al., 2019 (https://doi.org/10.1016/j.immuni.2018.11.004)
Alzheimers_GWAS_1Mb_genes_list
Extract gene names within +-500kb of all known Alzheimer's disease SNPs passing genome-wide significance
colorway
Functions for colors in R
samuel-marsh
Repository for personal website. Made using postcards R package.
hdWGCNA
High dimensional weighted gene co-expression network analysis
liger
R package for integrating and analyzing multiple single-cell datasets
Nebulosa
R package to visualize gene expression data based on weighted kernel density estimation
scater
Clone of the Bioconductor repository for the scater package.
sceasy
A package to help convert different single-cell data formats to each other
scuttle
Clone of the Bioconductor repository for the scuttle package.
seurat
R toolkit for single cell genomics
seurat-wrappers
Community-provided extensions to Seurat