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Sali Lab (salilab)

Sali Lab

salilab

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Laboratory of Andrej Sali at the University of California San Francisco

Location:San Francisco, CA

Home Page:https://salilab.org

Twitter:@salilab_ucsf

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Sali Lab's repositories

imp

The Integrative Modeling Platform

Language:C++License:GPL-3.0Stargazers:71Issues:41Issues:1066

pmi

Python Modeling Interface

Language:PythonStargazers:12Issues:33Issues:256

rmf

The library to support reading and writing of RMF files.

Language:C++License:Apache-2.0Stargazers:8Issues:27Issues:128

saliweb

Simple framework for web services in the Sali lab

Language:PythonLicense:LGPL-2.1Stargazers:5Issues:4Issues:2

conda-recipes

Recipes for the conda package manager

Language:ShellLicense:CC-BY-SA-4.0Stargazers:3Issues:3Issues:18

foxs

Web server for fast SAXS profile computation with Debye formula

Language:JavaScriptLicense:LGPL-2.1Stargazers:3Issues:18Issues:1

imp-sampcon

Scripts to assess sampling convergence and exhaustiveness

Language:PythonLicense:GPL-2.0Stargazers:3Issues:24Issues:21

imp_tutorial

Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks

Language:PythonLicense:CC-BY-SA-4.0Stargazers:3Issues:31Issues:33

npctransport

IMP module for simulating transport through the NPC.

Language:C++Stargazers:3Issues:25Issues:25

SOAP

Python SOAP framework for calculating statistically optimized atomic potentials

Language:PythonStargazers:3Issues:33Issues:0

PMI_analysis

Language:PythonStargazers:2Issues:22Issues:8

allosmod

Web service for simulations on a user-provided energy landscape

Language:PerlLicense:LGPL-2.1Stargazers:1Issues:4Issues:0

cross_linking_tutorial

Introduction to working with cross-linking data using IMP

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:1Issues:20Issues:0

homebrew-salilab

🍻 Sali Lab formulae for homebrew

Language:RubyLicense:CC-BY-SA-4.0Stargazers:1Issues:6Issues:1

imp_website

Website for the IMP project

Language:PHPLicense:CC-BY-SA-4.0Stargazers:1Issues:35Issues:2

mist

Mass spectrometry interaction STatistics

Language:PythonLicense:LGPL-3.0Stargazers:1Issues:21Issues:2

mist-web

Mass spectrometry interaction STatistics (web interface)

Language:PythonLicense:LGPL-3.0Stargazers:1Issues:22Issues:0

rmf_chimerax

ChimeraX plugin to read and visualize RMF files

Language:PythonLicense:MITStargazers:1Issues:21Issues:1

actin_tutorial

IMP/PMI tutorial, modeling the complex of actin and tropomodulin-gelsolin chimera

Language:PythonLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:4

EnsembleInference.jl

Language:JuliaLicense:MITStargazers:0Issues:16Issues:1

evaluation

Web service for evaluating protein structure models

Language:PythonLicense:LGPL-2.1Stargazers:0Issues:4Issues:0

foxs_tutorial

Tutorial for fitting against SAXS data using FoXS and MultiFoXS

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_analysis_tutorial

Language:PythonLicense:NOASSERTIONStargazers:0Issues:18Issues:4

imp_brownian_dynamics_tutorial

Tutorial for running Brownian dynamics simulations using IMP

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:0

imp_coding_tutorial

Introduction to writing IMP code

Language:PythonLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:0

imp_deposition_tutorial

Introduction to depositing IMP models in PDB-Dev

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:0

imp_using_cpp_tutorial

Tutorial on using IMP as a library in other C++ projects

Language:CMakeLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:0

imp_valgrind_tutorial

Tutorial on debugging IMP code with Valgrind

Language:CMakeLicense:CC-BY-SA-4.0Stargazers:0Issues:18Issues:0

profiling_tutorial

Tutorial on CPU profiling of IMP code using Google's gperftools

License:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

tutorial_tools

đź›  Support infrastructure useful for all IMP tutorials

Language:PythonLicense:LGPL-2.1Stargazers:0Issues:22Issues:0