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Sali Lab (salilab)

Sali Lab

salilab

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Laboratory of Andrej Sali at the University of California San Francisco

Location:San Francisco, CA

Home Page:https://salilab.org

Twitter:@salilab_ucsf

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Sali Lab's repositories

imp

The Integrative Modeling Platform

Language:C++License:GPL-3.0Stargazers:69Issues:41Issues:1066

pmi

Python Modeling Interface

Language:PythonStargazers:11Issues:32Issues:256

rmf

The library to support reading and writing of RMF files.

Language:C++License:Apache-2.0Stargazers:7Issues:27Issues:128

metamodeling

Language:MATLABStargazers:5Issues:19Issues:12

modloop

Web server for automated modeling of loops in protein structures

Language:PythonLicense:LGPL-2.1Stargazers:5Issues:4Issues:0

saliweb

Simple framework for web services in the Sali lab

Language:PythonLicense:LGPL-2.1Stargazers:5Issues:4Issues:2

conda-recipes

Recipes for the conda package manager

Language:ShellLicense:CC-BY-SA-4.0Stargazers:3Issues:3Issues:18

imp-sampcon

Scripts to assess sampling convergence and exhaustiveness

Language:PythonLicense:GPL-2.0Stargazers:3Issues:24Issues:20

imp_tutorial

Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks

Language:PythonLicense:CC-BY-SA-4.0Stargazers:3Issues:31Issues:33

IHMValidation

Validation software for integrative models deposited to PDB

Language:HTMLLicense:MITStargazers:2Issues:12Issues:50

npctransport

IMP module for simulating transport through the NPC.

Language:C++Stargazers:2Issues:25Issues:25

pyRMSD

pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.

Language:C++License:NOASSERTIONStargazers:2Issues:3Issues:0

cross_linking_tutorial

Introduction to working with cross-linking data using IMP

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:1Issues:19Issues:0

cryptosite-web

Web server for prediction of cryptic binding sites

Language:PythonLicense:LGPL-2.1Stargazers:1Issues:16Issues:0

homebrew-salilab

🍻 Sali Lab formulae for homebrew

Language:RubyLicense:CC-BY-SA-4.0Stargazers:1Issues:4Issues:1

imp_website

Website for the IMP project

Language:PHPLicense:CC-BY-SA-4.0Stargazers:1Issues:35Issues:2

threading

IMP module to sample sequence threading

Language:PythonStargazers:1Issues:20Issues:2

actin_tutorial

IMP/PMI tutorial, modeling the complex of actin and tropomodulin-gelsolin chimera

Language:PythonLicense:CC-BY-SA-4.0Stargazers:0Issues:21Issues:4

developer_tools

🛠 Useful scripts used by several projects.

Language:PythonLicense:LGPL-2.1Stargazers:0Issues:25Issues:4

foxs_tutorial

Tutorial for fitting against SAXS data using FoXS and MultiFoXS

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_analysis_tutorial

Language:PythonLicense:NOASSERTIONStargazers:0Issues:15Issues:4

imp_brownian_dynamics_tutorial

Tutorial for running Brownian dynamics simulations using IMP

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_coding_tutorial

Introduction to writing IMP code

Language:PythonLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_deposition_tutorial

Introduction to depositing IMP models in PDB-Dev

Language:Jupyter NotebookLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_gpu_benchmarks

Feasibility study for an IMP GPU implementation

Language:C++License:MITStargazers:0Issues:0Issues:0

imp_using_cpp_tutorial

Tutorial on using IMP as a library in other C++ projects

Language:CMakeLicense:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

imp_valgrind_tutorial

Tutorial on debugging IMP code with Valgrind

Language:CMakeLicense:CC-BY-SA-4.0Stargazers:0Issues:17Issues:0

profiling_tutorial

Tutorial on CPU profiling of IMP code using Google's gperftools

License:CC-BY-SA-4.0Stargazers:0Issues:20Issues:0

raindrops

Data driven optimal rigid bodies from protein complexes

Language:PythonLicense:GPL-2.0Stargazers:0Issues:17Issues:0

tutorial_tools

🛠 Support infrastructure useful for all IMP tutorials

Language:PythonLicense:LGPL-2.1Stargazers:0Issues:21Issues:0