Sali Lab

imp

The Integrative Modeling Platform

cryptosite

Library for prediction of cryptic binding sites

pmi

Python Modeling Interface

rmf

The library to support reading and writing of RMF files.

saliweb

Simple framework for web services in the Sali lab

allosmod-lib

Protocol to model with allostery

imp-sampcon

Scripts to assess sampling convergence and exhaustiveness

bayesian_hdx

Support code for HDX data reduction

IHMValidation

Validation software for integrative models deposited to PDB

npctransport

IMP module for simulating transport through the NPC.

PMI_analysis

cross_linking_tutorial

Introduction to working with cross-linking data using IMP

domino3

Experimental DOMINO variant using traditional inference

homebrew-salilab

🍻 Sali Lab formulae for homebrew

mdt

Generate frequency tables used by Modeller and IMP.

mist

Mass spectrometry interaction STatistics

optrep

IMP module for optimal coarse-grained bead representation

rmf_chimerax

ChimeraX plugin to read and visualize RMF files

threading

IMP module to sample sequence threading

developer_tools

🛠 Useful scripts used by several projects.

imp_brownian_dynamics_tutorial

Tutorial for running Brownian dynamics simulations using IMP

imp_coding_tutorial

Introduction to writing IMP code

imp_nightly_builds

Infrastructure to build and test IMP on a nightly basis

imp_spatiotemporal_tutorial

Tutorial for computing spatiotemporal integrative models in IMP

imp_using_cpp_tutorial

Tutorial on using IMP as a library in other C++ projects

imp_valgrind_tutorial

Tutorial on debugging IMP code with Valgrind

profiling_tutorial

Tutorial on CPU profiling of IMP code using Google's gperftools

raindrops

Data driven optimal rigid bodies from protein complexes

systems-web

Web application to show integrative modeling "systems" pages

tutorial_tools

🛠 Support infrastructure useful for all IMP tutorials