ryan-williams

software-ideas

scratchpad about software i'd like someone to make

Amazon-S3-FileSystem-NIO2

An S3 File System Provider for Java 7

coverage-depth

Generate genomic-coverage-depth histograms using Apache Spark

fastavro

Fast Avro for Python

gcsfs

Pythonic file-system interface for Google Cloud Storage

genomic-loci

Utilities for representing genomic loci and reference-genomes

genomic-reads

Library for representing and working with genomic-sequencing reads.

genomic-readsets

Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.

genomic-reference

Utilities for representing and working with reference genomes

genomic-utils

Utilities for working with genomic bases, cigar strings, and phred scores.

goenv

Isolated development environments for Go

google-cloud-java

Google Cloud Client Library for Java

hdf5-cloud

A small, experimental library for reading HDF5 files in parallel from the Cloud using Java and Spark.

intellij-bugs

Repros of IntelliJ issues I've encountered

intellij-logs

Dump of IntelliJ IDEA logs, for linking to from youtrack issues

iterator

Some Scala Iterators and useful Iterator-related abstractions

JBlosc

Java interface for Blosc library

magic-rdds

Miscellaneous functionality for manipulating Apache Spark RDDs.

mill

Your shiny new Scala build tool!

parquet-format

Apache Parquet

parquet-mr

Apache Parquet

paths

Scala convenience-wrapper for java.nio.file.Path

scalapuzzlers.github.com

Github Pages behind scalapuzzlers.com

sensors

Home temperature + humidity metrics: custom sensors and dashboards

single-cell-experiments

spark-bam

Extension of HadoopGenomics/hadoop-bam

spark-commands

Interfaces for creating CLI-runnable and testable Spark commands/apps

spark-tests

Utilities for writing tests that use Apache Spark.

spark-util

Low-level helpers for Spark libraries and tests

thredds

Thredds and netCDF-Java (CDM)