Hammer Lab's repositories
survivalstan
Library of Stan Models for Survival Analysis
ppx_deriving_cmdliner
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
dask-distributed-on-kubernetes
Deploy dask-distributed on google container engine using kubernetes
prohlatype
Probabilistic HLA typing
spark-tests
Utilities for writing tests that use Apache Spark.
t-cell-relation-extraction
Literature mining for T cell relations
magic-rdds
Miscellaneous functionality for manipulating Apache Spark RDDs.
spark-json-relay
SparkListener that converts SparkListenerEvents to JSON and forwards them to an external service via RPC.
spark-util
low-level helpers for Apache Spark libraries and tests
awesome-clonality
A curated list of awesome clonality and tumor heterogeneity resources
sbt-parent
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
vcf-annotate-polyphen
A tool to annotate human VCF files with PolyPhen2 effect measures
math-utils
Math and statistics utilities
SmartCount
Repository for collaboration on Celldom computer vision solutions
t-cell-electroporation
Code/Data repository for "Electroporation characteristics of human primary T cells"
sbt-parent.g8
giter8 template for the hammerlab/sbt-parent SBT plugin
t-cell-activation
Modeling bead based T cell activation to optimize ex vivo culturing conditions
tcr-transfer
Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs