Rad Suchecki's repositories
embl-abr-snakemake-nextflow-workshop
Hands-on workshop for Snakemake and Nextflow
pretzel
Javascript full-stack framework for Big Data visualisation and analysis
slides
ad hoc slides
biostat561
Course materials for BIOST561
biokanga
An integrated high performance bioinformatics toolkit
bioconda-recipes
Conda recipes for the bioconda channel.
Dart
DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy
kevlar
Reference-free variant discovery in large eukaryotic genomes
example-repo
An example project repository
gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
busco
Forked: dockerfile for busco - Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs
ime_busco
A Docker image providing the BUSCO software
cve-2019-5736-poc
Unweaponized Proof of Concept for CVE-2019-5736 (Docker escape)
radiator
RADseq Data Exploration, Manipulation and Visualization using R
onemetagenome
One metagenome pipeline to rule them all - this nextflow pipeline is a complete end-to-end metagenomic solution creating visualisations of taxonomic data from fastq input files, by utilising mmseq
nextflow_intro
Introduction to nextflow
docker-potage
Dockerfile for POTAGE
conda-rnftools
Dockerized rnftools
elsmd
Easy lecture slides made difficult with pandoc and beamer
potage
POTAGE: Popseq Ordered Triticum Aestivum Gene Expression
potage_data
Public data sets repository for POTAGE
rmarkdown-workshop
A workshop format for rmarkdown. Releases contain locations in chronological order