Rad Suchecki's repositories
APIs-for-Libraries
APIs for Librarians
awesome-workflow-engines
A curated list of awesome open source workflow engines
bioinformatics-workbook
Bioinformatics Workbook repository
containers-bioinformatics-workshop
UNDER CONSTRUCTION -- Workshop on Singularity Containers for Bioinformatics
crobiad.github.io
Crop Bioinformatics Adelaide (CroBiAd) group website
docker-pull
Save your Docker Hub containers from ultimate doom!
features
A collection of Dev Container Features managed by Dev Container spec maintainers. See https://github.com/devcontainers/feature-starter to publish your own
ForestSoils
Analysis, data, and workup for soil quality data
kmersGWAS
A library for running k-mers based GWAS
miniconda3
Versioned container recipes
multi-package-containers
Testing building mulled containers for multi-requirement tools.
Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
nexflow_version_tracking
Test Nextflow workflow which caches outputs and names according to versions of individual processes.
nextflow
A DSL for data-driven computational pipelines
nextflow-walkthrough
Nextflow code for "Implementing Scalable Bioinformatic Workflows in Snakemake and Nextflow"
NextflowCSIRO2023
Nextflow tutorial at CSIRO 2023
pretzel-data
Data structure for https://github.com/plantinformatics/pretzel
setup-java
Set up your GitHub Actions workflow with a specific version of Java