sigQC: Quality Control Metrics for Gene Signatures
Overview
Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.
Installation
# install from CRAN
install.packages("sigQC")Citation
Dhawan A, Barberis A, Cheng W, Domingo E, West C, Maughan T, Scott J, Harris A, Buffa F. Guidelines for using sigQC for systematic evaluation of gene signatures. Nature Protocols. 2019; 14: 1377-1400. doi:10.1038/s41596-019-0136-8
Citation information can be retrieved from R with the following code:
# get BibTeX and text citation information from R
citation("sigQC")A bioRxiv preprint is available here.