romainviard

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

dl-docker

An all-in-one Docker image for deep learning. Contains all the popular DL frameworks (TensorFlow, Theano, Torch, Caffe, etc.)

nibabel

Python package to access a cacophony of neuro-imaging file formats

ChameleonUltraGUI

A GUI for the Chameleon Ultra written in Flutter for crossplatform

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

pandas-tutorial

Material for the pandas tutorial at EuroScipy 2016

PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

Neuroimaging_Pattern_Masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.

micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

AFQ

Automated Fiber Quantification

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

whitematteranalysis

White matter tractography clustering and more...

md-dmri

MATLAB code for Multidimensional Diffusion MRI

encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

MSM_HOCR

Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries

AFQ-Browser

Browser-based visualization tools for AFQ results

HCP_download

Script to download data from the Human Connectome Project, HCP-1200 subjects release.

tractor

Magnetic resonance imaging and tractography with R

tract_querier

Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis

ORG-Atlases

ORG Fiber Clustering White Matter Atlas

ismrm_2015_tractography_challenge_scoring

Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge

35_methods_MICCAI_2017

Code for MICCAI 2017 paper

methodes-cogneuro.github.io

Notes de cours pour PSY3018 - Méthodes en neurosciences cognitives

toad

No Longer Maintained

scientific-python-intro-45mins

An intro presentation of scientific Python in 45 minutes

Brain-Graph-Tools

Tools for data mining of brain graphs. Related publication: http://dx.doi.org/10.1007/s11571-017-9445-1

docker-for-scientists

pyclers

une version python de l'application plickers