rmandla's repositories
genotyping-qc-pipeline
Scripts and General Pipeline for QC-ing genotyping data
rna-seq-tutorial
Practice RNA-seq problems
atacseq-heatmaps
Tutorial Code on creating sample comparison heatmaps from ATAC-Seq data
bedtools-tutorial
A basic tutorial on using bedtools with practice problems
biobank_trait_report
Generate pdf reports of traits to identify data sources or classifications to be used in cleaning and data harmonization
bioe131
bioengineering 131 stuff
bmi206
Code for bmi206 - 2019
ezUCSC
A series of different scripts to speed up the process of downloading data from the UCSC genome browser
Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
HIV-Classifier
Classifying HIV into subtypes based on their genomic data
MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
MultiSeq-Primer-Design
Easily design primers for many sequences
phast-examples
Example use cases of the phast package
quantized-redness
Write-up of my work quantizing redness in butterfly hind wings
rmandla.github.io
Website for the Vedantham Lab
travis-broken-example
An example that will cause a build failure