RKI MF1 Bioinformatics's repositories
2023-SC2-Data-Science
Material for the SARS-CoV-2 data science course at FU Berlin.
2024-Workshop-EEBG
Eastern European Bioinformatics and Computational Genomics School (EEBG): Primer on linux, nanopore, and metagenomics
2023-GHPP-SGS-Nanopore-Metagenomics
A practical introduction to long-read metagenomics in the context of the 2023 GHPP "Strengthening Genomic Surveillance" workshop..
2023-Workshop-MISSIoN-Nanopore
A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.
2024-Workshop-Namibia
Practical introduction to long-read bioinformatics on the flu virus .
2023-Workshop-Madagascar-IGS
A practical introduction to short-read bioinformatics for bacterial genome reconstruction in the context of the Madagascar IGS workshop.ct.
update-varvamp-bed
to update the primer bed positions from varvamp results based on given reference
workshop-nanopore-bioinformatics
Main resource for practical introductions to long-read bioinformatics.
2023-NGS-Summer-School
NGS Summer School about Nanopore long-read bioinformatics and bacteria genome assembly.
CoverageAnomalyScanner
Application to find local anomalies in read coverage and to predict putative SV events
rki-mf1.github.io
RKI Bioinformatics Research team page
rubyscholar
Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)
covsonar2
covsonar 2: an updated version of covsonar, our database for storing and querying mutations and metadata
Find_Giardia_Primer_Regions
Snakemake pipeline to find potential giardia primer regions
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sc2-mutation-frequency-calculator
Python tool to calculate characteristic and signature mutations based on mutation profiles for a certain timeframe.