rjsicko

fabric

fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

godot

Godot Engine – Multi-platform 2D and 3D game engine

PrimerScore2

a robust high-throughput primer design tool that designs multiple types of primers in one click

datavzrd

A tool to create visual HTML reports from collections of CSV/TSV tables

gw

Genome browser and variant annotation

aioli

Framework for building fast genomics web tools with WebAssembly and WebWorkers

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

variantgrid

VariantGrid public repo

realworld

"The mother of all demo apps" — Exemplary fullstack Medium.com clone powered by React, Angular, Node, Django, and many more

MarkdownViewerPlusPlus

A Notepad++ Plugin to view a Markdown file rendered on-the-fly

NGS-PrimerPlex

NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design

DeviCNV

Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data

CharGer

Characterization of Germline variants

nextflow-clinvap

cronkite

One **hell** of a reporter

digestiflow-server

:cocktail: Web-based database system for flow cell management (incl. REST API)

longshot

diploid SNV caller for error-prone reads

MutScan

Detect and visualize target mutations by scanning FastQ files directly

repaq

A fast lossless FASTQ compressor with ultra-high compression ratio

PyInotify

An efficient and elegant inotify (Linux filesystem activity monitor) library for Python. Python 2 and 3 compatible.

sage

Sanger Trace Alignment

silica

In-silico PCR amplification on complete genomes

teal

Sanger Trace Viewer

ClinCNV

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

bamject

DO NOT USE inject variants (snps/indels) from a vcf into a bam efficiently.

varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

method_verification

Method verification report

SpliceAI

A deep learning-based tool to identify splice variants

sra-explorer

Web application to explore the Sequence Read Archive.

open-cravat

A modular annotation tool for genomic variants