Ronald Herrera's repositories
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Capr
Cohort definition Application Programming in R
Covid19CharacterizationCharybdis
Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographic, clinical characteristics, treatments and outcomes of interest among individuals tested for SARS-CoV-2 and/or diagnosed with COVID-19 compared to Influenza patients from 2017-2018
Covid19VaccineAesiIncidenceCharacterization
Calculating the background rates of adverse events of special interest (AESI) for the COVID vaccines
Criteria2Query
[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
DoacsWarfarinSub
This study evaluated the comparative risk of severe uterine bleeding for rivaroxaban, apixaban, dabigatran, and warfarin therapies among propensity score-matched patients with non-valvular atrial fibrillation and venous thromboembolism in routine clinical practice.
Era-Constructor
This is a repo that contains standardized code for hte construction of Drug Eras, Dose Eras and Condition Eras
IncidencePrevalence
Estimating incidence and prevalence with the OMOP CDM
lmtp
:package: Non-parametric Causal Effects of Feasible Interventions Based on Modified Treatment Policies :crystal_ball:
medoutcon
:package: R/medoutcon: Efficient Causal Mediation Analysis with Intermediate Confounders
mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
NetworkMetaAnalysis
[in development] A package to take a collection of target-comparator-outcome estimates and produce indirect network meta-analytics estimates across all target-comparator-outcomes
PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
phendo
Public repository with the work on the Phendo app
PhenotypeLibrary
A repository to store, organize and maintain the content of the OHDSI Phenotype library.
PheValuator
An R package for evaluating phenotype algorithms.
PioneerWatchfulWaiting
This study is part of the joint PIONEER - EHDEN - OHDSI studyathon in March 2021, and aims to advance understanding of clinical management and outcomes of watchful waiting in prostate cancer.
PrettyPDF
Quarto extension to generate a PDF with (pretty) LaTeX or Typst styling.
refund
Regression with functional data
ScyllaCharacterization
The aim of this study is to characterize all emerging drug therapies used in COVID-19 treatment.
steroids-trial-emulation
Tutorial for a target trial emulation with a time-varying exposure, time-dependent confounding, and a time-to-event outcome. Estimation is Sequentially Doubly Robust (SDR). Application is corticosteroids effect on mortality.
StudyProtocolSandbox
This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
tidyfun
Clean, wholesome, tidy fun with functional data in R:
TreatmentPatterns
An R package to analyze treatment patterns of a study population of interestÂ
visR
A package to wrap functionality for plots, tables and diagrams adhering to graphical principles.