Resurgo Genetics's repositories
arvados_trial
Pilot test for using the Arvados system to create new MGI cancer pipelines.
Leaflet
:leaves: JavaScript library for mobile-friendly interactive maps
common-workflow-language
Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
cwl
Common Workflow Language tools and workflows by Pitagora-Network
GrapHi-C
GrapHi-C: graph-based visualization of Hi-C data
reana
REANA: Reusable research data analysis platform
test_bcbio_cwl
Test workflows, run scripts and data for bcbio Common Workflow Language integration
python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
composer
Visual and code editor for Common Workflow Language
language-cwl
atom plugin for cwl
pipelines-cwl
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
GGR-cwl
CWL tools and workflows for GGR
cwl-svg
A library for generating an interactive SVG visualization of CWL workflows
cwltest
Framework for testing CWL tools and workflows
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
containers
Bioinformatics containers
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
pytudes
Python programs to practice or demonstrate skills.
phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
cactus
Genome aligner based upon notion of Cactus graphs
uTensor
AI inference library based on mbed and TensorFlow
sambamba
Tools for working with SAM/BAM/CRAM data
redis-py
Redis Python Client
imagehash
A Python Perceptual Image Hashing Module
sonLib
Small general purpose library for C and Python with focus on bioinformatics.
mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
boruta_py
Python implementations of the Boruta all-relevant feature selection method.
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116